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Interactive visualization for Illumina methylation arrays

Bioconductor version: Release (3.18)

Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("shinyMethyl")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

shinyMethyl: interactive visualization of Illumina 450K methylation arrays HTML R Script
Reference Manual PDF


biocViews DNAMethylation, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.38.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Imports Biobase, BiocGenerics, graphics, grDevices, htmltools, MatrixGenerics, methods, minfi, RColorBrewer, shiny, stats, utils
System Requirements
URL https://github.com/Jfortin1/shinyMethyl
Bug Reports https://github.com/Jfortin1/shinyMethyl
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Suggests shinyMethylData, minfiData, BiocStyle, knitr, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package shinyMethyl_1.38.0.tar.gz
Windows Binary shinyMethyl_1.38.0.zip
macOS Binary (x86_64) shinyMethyl_1.38.0.tgz
macOS Binary (arm64) shinyMethyl_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/shinyMethyl
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/shinyMethyl
Bioc Package Browser https://code.bioconductor.org/browse/shinyMethyl/
Package Short Url https://bioconductor.org/packages/shinyMethyl/
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