Registration Open for Bioc2024
Early registration discount pricing ends May 31!

shinyMethyl

This is the development version of shinyMethyl; for the stable release version, see shinyMethyl.

Interactive visualization for Illumina methylation arrays


Bioconductor version: Development (3.20)

Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("shinyMethyl")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("shinyMethyl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shinyMethyl")
shinyMethyl: interactive visualization of Illumina 450K methylation arrays HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DNAMethylation, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.41.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends
Imports Biobase, BiocGenerics, graphics, grDevices, htmltools, MatrixGenerics, methods, minfi, RColorBrewer, shiny, stats, utils
System Requirements
URL https://github.com/Jfortin1/shinyMethyl
Bug Reports https://github.com/Jfortin1/shinyMethyl
See More
Suggests shinyMethylData, minfiData, BiocStyle, knitr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package shinyMethyl_1.41.0.tar.gz
Windows Binary shinyMethyl_1.41.0.zip
macOS Binary (x86_64) shinyMethyl_1.41.0.tgz
macOS Binary (arm64) shinyMethyl_1.41.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/shinyMethyl
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/shinyMethyl
Bioc Package Browser https://code.bioconductor.org/browse/shinyMethyl/
Package Short Url https://bioconductor.org/packages/shinyMethyl/
Package Downloads Report Download Stats