shinyMethyl
This is the development version of shinyMethyl; for the stable release version, see shinyMethyl.
Interactive visualization for Illumina methylation arrays
Bioconductor version: Development (3.20)
Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.
Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]
Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>
Citation (from within R, enter
citation("shinyMethyl")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("shinyMethyl")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("shinyMethyl")
shinyMethyl: interactive visualization of Illumina 450K methylation arrays | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DNAMethylation, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
Version | 1.41.1 |
In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
License | Artistic-2.0 |
Depends | |
Imports | Biobase, BiocGenerics, graphics, grDevices, htmltools, MatrixGenerics, methods, minfi, RColorBrewer, shiny, stats, utils |
System Requirements | |
URL | https://github.com/Jfortin1/shinyMethyl |
Bug Reports | https://github.com/Jfortin1/shinyMethyl |
See More
Suggests | shinyMethylData, minfiData, BiocStyle, knitr, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | shinyMethyl_1.41.1.tar.gz |
Windows Binary | shinyMethyl_1.41.1.zip (64-bit only) |
macOS Binary (x86_64) | shinyMethyl_1.41.1.tgz |
macOS Binary (arm64) | shinyMethyl_1.41.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/shinyMethyl |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/shinyMethyl |
Bioc Package Browser | https://code.bioconductor.org/browse/shinyMethyl/ |
Package Short Url | https://bioconductor.org/packages/shinyMethyl/ |
Package Downloads Report | Download Stats |