shinyMethylData
Example dataset of input data for shinyMethyl
Bioconductor version: 3.24 · Package version: 1.33.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Extracted data from 369 TCGA Head and Neck Cancer DNA methylation samples. The extracted data serve as an example dataset for the package shinyMethyl. Original samples are from 450k methylation arrays, and were obtained from The Cancer Genome Atlas (TCGA). 310 samples are from tumor, 50 are matched normals and 9 are technical replicates of a control cell line.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("shinyMethylData")Details
| Maintainer | Jean-Philippe Fortin <jfortin@jhsph.edu> |
| Author | Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut] |
| License | Artistic-2.0 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | CancerData, ExperimentData, Genome |
| Package Short Url | https://bioconductor.org/packages/shinyMethylData/ |
Citation
From within R, enter citation("shinyMethylData"):
Jean-Philippe Fortin, Kasper Daniel Hansen. shinyMethylData: Example dataset of input data for shinyMethyl. doi:10.18129/B9.bioc.shinyMethylData, R package version 1.33.0, https://bioconductor.org/packages/shinyMethylData.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | shinyMethylData_1.33.0.tar.gz |
Dependencies
Depends: R (>= 3.0.0)
Reverse dependencies
Suggests Me (1): shinyMethyl