Welcome to the new bioconductor.org!


This is the development version of shinyMethylData; for the stable release version, see shinyMethylData.

Example dataset of input data for shinyMethyl

Bioconductor version: Development (3.19)

Extracted data from 369 TCGA Head and Neck Cancer DNA methylation samples. The extracted data serve as an example dataset for the package shinyMethyl. Original samples are from 450k methylation arrays, and were obtained from The Cancer Genome Atlas (TCGA). 310 samples are from tumor, 50 are matched normals and 9 are technical replicates of a control cell line.

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>

Citation (from within R, enter citation("shinyMethylData")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews CancerData, ExperimentData, Genome
Version 1.23.0
License Artistic-2.0
Depends R (>= 3.0.0)
System Requirements
See More
Linking To
Depends On Me
Imports Me
Suggests Me shinyMethyl
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package shinyMethylData_1.23.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/shinyMethylData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/shinyMethylData
Package Short Url https://bioconductor.org/packages/shinyMethylData/
Package Downloads Report Download Stats