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shinyMethylData

This is the development version of shinyMethylData; for the stable release version, see shinyMethylData.

Example dataset of input data for shinyMethyl


Bioconductor version: Development (3.19)

Extracted data from 369 TCGA Head and Neck Cancer DNA methylation samples. The extracted data serve as an example dataset for the package shinyMethyl. Original samples are from 450k methylation arrays, and were obtained from The Cancer Genome Atlas (TCGA). 310 samples are from tumor, 50 are matched normals and 9 are technical replicates of a control cell line.

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>

Citation (from within R, enter citation("shinyMethylData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("shinyMethylData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews CancerData, ExperimentData, Genome
Version 1.23.0
License Artistic-2.0
Depends R (>= 3.0.0)
Imports
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package shinyMethylData_1.23.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/shinyMethylData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/shinyMethylData
Package Short Url https://bioconductor.org/packages/shinyMethylData/
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