RLHub

DOI: 10.18129/B9.bioc.RLHub    

An ExperimentHub package for accessing processed RLSuite data sets

Bioconductor version: Release (3.14)

| RLHub provides a convenient interface to the processed data provided within RLSuite, a tool-chain for analyzing R-loop-mapping data sets. The primary purpose of RLHub is to serve the processed data sets required by the RLSeq R package and the RLBase web service. Additionally, RLHub provides a stand-alone R interface to these data, benefiting users who are addressing questions related to R-loop regions (RL-Regions), R-loop-binding proteins (RLBPs), R-loop co-localizing factors, and the differences between R-loop-mapping methods. The full data-generating protocol is found here: https://github.com/Bishop-Laboratory/RLBase-data.

Author: Henry Miller [aut, cre, cph] , Alexander Bishop [ths, cph]

Maintainer: Henry Miller <millerh1 at uthscsa.edu>

Citation (from within R, enter citation("RLHub")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RLHub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RLHub")

 

HTML R Script Accessing RLHub Data
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ChIPSeqData, DNASeqData, ENCODE, ExperimentData, ExperimentHub, ExpressionData, GEO, Genome, PackageTypeData, RNASeqData, ReproducibleResearch, SequencingData
Version 1.0.0
License MIT + file LICENSE
Depends
Imports AnnotationHub, ExperimentHub, utils
LinkingTo
Suggests knitr, DT, rmarkdown, testthat, BiocStyle
SystemRequirements
Enhances
URL https://github.com/Bishop-Laboratory/RLHub https://bishop-laboratory.github.io/RLHub/
BugReports https://github.com/Bishop-Laboratory/RLHub/issues
Depends On Me
Imports Me RLSeq
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RLHub_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/RLHub
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RLHub
Package Short Url https://bioconductor.org/packages/RLHub/
Package Downloads Report Download Stats

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