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qPLEXanalyzer

Tools for quantitative proteomics data analysis


Bioconductor version: Release (3.18)

Tools for TMT based quantitative proteomics data analysis.

Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]

Maintainer: Ashley Sawle <ads2202cu at gmail.com>

Citation (from within R, enter citation("qPLEXanalyzer")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qPLEXanalyzer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qPLEXanalyzer")
qPLEXanalyzer HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version 1.20.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License GPL-2
Depends R (>= 4.0), Biobase, MSnbase
Imports assertthat, BiocGenerics, Biostrings, dplyr (>= 1.0.0), ggdendro, ggplot2, graphics, grDevices, IRanges, limma, magrittr, preprocessCore, purrr, RColorBrewer, readr, rlang, scales, stats, stringr, tibble, tidyr, tidyselect, utils
System Requirements
URL
Bug Reports https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues
See More
Suggests gridExtra, knitr, qPLEXdata, rmarkdown, statmod, testthat, UniProt.ws, vdiffr
Linking To
Enhances
Depends On Me qPLEXdata
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qPLEXanalyzer_1.20.0.tar.gz
Windows Binary qPLEXanalyzer_1.20.0.zip (64-bit only)
macOS Binary (x86_64) qPLEXanalyzer_1.20.0.tgz
macOS Binary (arm64) qPLEXanalyzer_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/qPLEXanalyzer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qPLEXanalyzer
Bioc Package Browser https://code.bioconductor.org/browse/qPLEXanalyzer/
Package Short Url https://bioconductor.org/packages/qPLEXanalyzer/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive