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mosaics

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)


Bioconductor version: Release (3.18)

This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.

Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Citation (from within R, enter citation("mosaics")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mosaics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mosaics")
MOSAiCS PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription
Version 2.40.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License GPL (>= 2)
Depends R (>= 3.0.0), methods, graphics, Rcpp
Imports MASS, splines, lattice, IRanges, GenomicRanges, GenomicAlignments, Rsamtools, GenomeInfoDb, S4Vectors
System Requirements Perl
URL http://groups.google.com/group/mosaics_user_group
See More
Suggests mosaicsExample
Linking To Rcpp
Enhances parallel
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mosaics_2.40.0.tar.gz
Windows Binary mosaics_2.40.0.zip
macOS Binary (x86_64) mosaics_2.40.0.tgz
macOS Binary (arm64) mosaics_2.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mosaics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mosaics
Bioc Package Browser https://code.bioconductor.org/browse/mosaics/
Package Short Url https://bioconductor.org/packages/mosaics/
Package Downloads Report Download Stats