mosaics
This is the released version of mosaics; for the devel version, see mosaics.
All Bioconductor versions of mosaics
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
Bioconductor version: 3.23 · Package version: 2.50.0
This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.
Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles
Maintainer: Dongjun Chung <dongjun.chung at gmail.com>
Citation
From within R, enter citation("mosaics"):
Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles. mosaics: MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq). doi:10.18129/B9.bioc.mosaics, R package version 2.50.0, https://bioconductor.org/packages/mosaics.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mosaics")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 2.50.0 |
| License | GPL (>= 2) |
| URL | http://groups.google.com/group/mosaics_user_group |
| System Requirements | Perl |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.8 (R-2.13) (15 years) |
| Downloads rank | 452 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription |
| Package Short Url | https://bioconductor.org/packages/mosaics/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mosaics")| MOSAiCS | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | mosaics_2.50.0.tar.gz |
| Windows binary (x86_64) | mosaics_2.50.0.zip |
| macOS binary (arm64) | mosaics_2.50.0.tgz |
| macOS binary (x86_64) | mosaics_2.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mosaics |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mosaics |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.0.0), methods, graphics, Rcpp
Imports: MASS, splines, lattice, IRanges, GenomicRanges, GenomicAlignments, Rsamtools, Seqinfo, S4Vectors
LinkingTo: Rcpp
Suggests: mosaicsExample
Enhances: parallel