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An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"

Bioconductor version: Release (3.19)

'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by 'ggtree' with the grammar of 'ggplot2'.

Author: Shuangbin Xu [aut, cre] , Guangchuang Yu [aut, ctb]

Maintainer: Shuangbin Xu <xshuangbin at>

Citation (from within R, enter citation("ggtreeExtra")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

ggtreeExtra HTML R Script
Reference Manual PDF


biocViews Annotation, Phylogenetics, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL (>= 3)
Imports ggplot2, utils, rlang, ggnewscale, stats, ggtree, tidytree (>= 0.3.9), cli, magrittr
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Suggests treeio, ggstar, patchwork, knitr, rmarkdown, prettydoc, markdown, testthat (>= 3.0.0), pillar
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Depends On Me
Imports Me MicrobiotaProcess
Suggests Me enrichplot, ggmsa, pctax
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Follow Installation instructions to use this package in your R session.

Source Package ggtreeExtra_1.14.0.tar.gz
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macOS Binary (x86_64) ggtreeExtra_1.14.0.tgz
macOS Binary (arm64) ggtreeExtra_1.14.0.tgz
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Source Repository (Developer Access) git clone
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