ggsc
Visualizing Single Cell and Spatial Transcriptomics
Bioconductor version: 3.23 · Package version: 1.10.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Useful functions to visualize single cell and spatial data. It supports visualizing 'Seurat', 'SingleCellExperiment' and 'SpatialExperiment' objects through grammar of graphics syntax implemented in 'ggplot2'.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggsc")Details
| Maintainer | Guangchuang Yu <guangchuangyu@gmail.com> |
| Author | Guangchuang Yu [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-6485-8781>), Shuangbin Xu [aut] (ORCID: <https://orcid.org/0000-0003-3513-5362>), Noriaki Sato [ctb] |
| License | Artistic-2.0 |
| URL | https://github.com/YuLab-SMU/ggsc (devel), https://yulab-smu.top/ggsc/ (docs) |
| Bug Reports | https://github.com/YuLab-SMU/ggsc/issues |
| System Requirements | GNU make |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DimensionReduction, GeneExpression, SingleCell, Software, Spatial, Transcriptomics, Visualization |
| Package Short Url | https://bioconductor.org/packages/ggsc/ |
Citation
From within R, enter citation("ggsc"):
Guangchuang Yu, Shuangbin Xu. ggsc: Visualizing Single Cell and Spatial Transcriptomics. doi:10.18129/B9.bioc.ggsc, R package version 1.10.1, https://bioconductor.org/packages/ggsc.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ggsc_1.10.1.tar.gz |
| Windows binary (x86_64) | ggsc_1.10.1.zip |
| macOS binary (arm64) | ggsc_1.10.1.tgz |
| macOS binary (x86_64) | ggsc_1.10.1.tgz |
Dependencies
Depends: R (>= 4.1.0)
Imports: Rcpp, RcppParallel, cli, dplyr, ggfun (>= 0.1.5), ggplot2, grDevices, grid, methods, rlang, scattermore, stats, Seurat, SingleCellExperiment, SummarizedExperiment, tidydr, tidyr, tibble, utils, RColorBrewer, yulab.utils, scales
LinkingTo: Rcpp, RcppArmadillo, RcppParallel
Suggests: aplot, BiocParallel, forcats, ggforce, ggnewscale, igraph, knitr, ks, Matrix, prettydoc, rmarkdown, scran, scater, scatterpie (>= 0.2.4), scuttle, shadowtext, sf, SeuratObject, SpatialExperiment, STexampleData, testthat (>= 3.0.0), MASS
Reverse dependencies
Suggests Me (1): SVP