ggsc

DOI: 10.18129/B9.bioc.ggsc  

Visualizing Single Cell Data

Bioconductor version: Release (3.18)

Useful functions to visualize single cell and spatial data. It supports both 'SingleCellExperiment' and 'Seurat' objects. It also supports visualizing the data using grammar of graphics implemented in 'ggplot2'.

Author: Guangchuang Yu [aut, cre, cph] , Shuangbin Xu [aut]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggsc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggsc")

 

HTML	R Script	Visualizing single cell data
PDF		Reference Manual
Text		NEWS

Details

biocViews	DimensionReduction, GeneExpression, SingleCell, Software, Spatial, Transcriptomics, Visualization
Version	1.0.2
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends
Imports	Rcpp, RcppParallel, cli, dplyr, ggplot2, grDevices, grid, methods, rlang, scattermore, stats, Seurat, SingleCellExperiment, SummarizedExperiment, tidydr, tidyr, tibble, utils, yulab.utils
LinkingTo	Rcpp, RcppArmadillo, RcppParallel
Suggests	aplot, BiocParallel, forcats, ggforce, ggnewscale, igraph, knitr, ks, Matrix, prettydoc, rmarkdown, scran, scater, scuttle, shadowtext, sf, SeuratObject, SpatialExperiment, STexampleData, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL	https://github.com/YuLab-SMU/ggsc
BugReports	https://github.com/YuLab-SMU/ggsc/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ggsc_1.0.2.tar.gz
Windows Binary	ggsc_1.0.2.zip
macOS Binary (x86_64)	ggsc_1.0.2.tgz
macOS Binary (arm64)	ggsc_1.0.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ggsc
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ggsc
Bioc Package Browser	https://code.bioconductor.org/browse/ggsc/
Package Short Url	https://bioconductor.org/packages/ggsc/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.18	Source Archive