geneplotter
Graphics related functions for Bioconductor
Bioconductor version: Release (3.19)
Functions for plotting genomic data
Author: Robert Gentleman [aut], Rohit Satyam [ctb] (Converted geneplotter vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("geneplotter")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("geneplotter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("geneplotter")
How to Assemble a chromLocation Object | HTML | R Script |
Visualization of Microarray Data | R Script | |
Reference Manual | ||
README | Text | |
NEWS | Text |
Details
biocViews | Software, Visualization |
Version | 1.82.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.10), methods, Biobase, BiocGenerics, lattice, annotate |
Imports | AnnotationDbi, graphics, grDevices, grid, RColorBrewer, stats, utils |
System Requirements | |
URL |
See More
Suggests | Rgraphviz, fibroEset, hgu95av2.db, hu6800.db, hgu133a.db, BiocStyle, knitr |
Linking To | |
Enhances | |
Depends On Me | HD2013SGI, Hiiragi2013, maEndToEnd |
Imports Me | biocGraph, DEXSeq, MethylSeekR, RNAinteract |
Suggests Me | biocGraph, Category, EnrichmentBrowser, GOstats, Single.mTEC.Transcriptomes |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | geneplotter_1.82.0.tar.gz |
Windows Binary | geneplotter_1.82.0.zip (64-bit only) |
macOS Binary (x86_64) | geneplotter_1.82.0.tgz |
macOS Binary (arm64) | geneplotter_1.82.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/geneplotter |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/geneplotter |
Bioc Package Browser | https://code.bioconductor.org/browse/geneplotter/ |
Package Short Url | https://bioconductor.org/packages/geneplotter/ |
Package Downloads Report | Download Stats |