geneplotter

This is the released version of geneplotter; for the devel version, see geneplotter.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Graphics related functions for Bioconductor

Bioconductor version: Release (3.23)

Functions for plotting genomic data

Author: Robert Gentleman [aut], Rohit Satyam [ctb] (Converted geneplotter vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("geneplotter")):

Robert Gentleman. geneplotter: Graphics related functions for Bioconductor. doi:10.18129/B9.bioc.geneplotter, R package version 1.90.0, https://bioconductor.org/packages/geneplotter.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geneplotter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneplotter")

Visualization of Microarray Data	PDF	R Script
How to Assemble a chromLocation Object	HTML	R Script
Reference Manual	PDF
README	Text
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Software, Visualization
Version	1.90.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21.5 years)
License	Artistic-2.0
Depends	R (>= 2.10), methods, Biobase, BiocGenerics, lattice, annotate
Imports	AnnotationDbi, graphics, grDevices, grid, RColorBrewer, stats, utils
System Requirements
URL

Suggests	Rgraphviz, fibroEset, hgu95av2.db, hu6800.db, hgu133a.db, BiocStyle, knitr
Linking To
Enhances
Depends On Me	HD2013SGI
Imports Me	biocGraph, DEXSeq, ENmix, MethylSeekR
Suggests Me	AgiMicroRna, biocGraph, Category, EnrichmentBrowser, GOstats, Hiiragi2013, Single.mTEC.Transcriptomes
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	geneplotter_1.90.0.tar.gz
Windows Binary (x86_64)	geneplotter_1.90.0.zip
macOS Binary (big-sur-x86_64)	geneplotter_1.90.0.tgz
macOS Binary (sonoma-arm64)	geneplotter_1.90.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/geneplotter
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/geneplotter
Package Short Url	https://bioconductor.org/packages/geneplotter/
Package Downloads Report	Download Stats