HD2013SGI

This is the released version of HD2013SGI; for the devel version, see HD2013SGI.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

Bioconductor version: Release (3.23)

This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.

Author: Bernd Fischer

Maintainer: Mike Smith <mike.smith at embl.de>

Citation (from within R, enter citation("HD2013SGI")):

Bernd Fischer. HD2013SGI: Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping. doi:10.18129/B9.bioc.HD2013SGI, R package version 1.52.0, https://bioconductor.org/packages/HD2013SGI.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HD2013SGI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HD2013SGI")

HD2013SGI	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CancerData, CellCulture, ColonCancerData, ExperimentData, HighThroughputImagingData, Homo_sapiens_Data, MicrotitrePlateAssayData
Version	1.52.0
In Bioconductor since	BioC 2.12 (R-3.0) (13.5 years)
License	Artistic-2.0
Depends	R (>= 2.10.0), RColorBrewer, gplots, geneplotter, splots, limma, vcd, LSD, EBImage
Imports
System Requirements	GNU make
URL

Suggests	BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	splots
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HD2013SGI_1.52.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/HD2013SGI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HD2013SGI
Package Short Url	https://bioconductor.org/packages/HD2013SGI/
Package Downloads Report	Download Stats