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HD2013SGI

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping


Bioconductor version: Release (3.18)

This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.

Author: Bernd Fischer

Maintainer: Mike Smith <mike.smith at embl.de>

Citation (from within R, enter citation("HD2013SGI")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HD2013SGI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HD2013SGI")
HD2013SGI PDF R Script
Reference Manual PDF

Details

biocViews CancerData, CellCulture, ColonCancerData, ExperimentData, HighThroughputImagingData, Homo_sapiens_Data, MicrotitrePlateAssayData
Version 1.42.0
License Artistic-2.0
Depends R (>= 2.10.0), RColorBrewer, gplots, geneplotter, splots, limma, vcd, LSD, EBImage
Imports
System Requirements GNU make
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HD2013SGI_1.42.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/HD2013SGI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HD2013SGI
Package Short Url https://bioconductor.org/packages/HD2013SGI/
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