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biocGraph

Graph examples and use cases in Bioinformatics


Bioconductor version: Release (3.18)

This package provides examples and code that make use of the different graph related packages produced by Bioconductor.

Author: Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sethf at fhcrc.org> Florian Hahne <fhahne at fhcrc.org>

Maintainer: Florian Hahne <florian.hahne at novartis.com>

Citation (from within R, enter citation("biocGraph")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biocGraph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biocGraph")
Examples of plotting graphs Using Rgraphviz PDF R Script
HOWTO layout pathways PDF R Script
Reference Manual PDF

Details

biocViews GraphAndNetwork, Software, Visualization
Version 1.64.0
In Bioconductor since BioC 2.1 (R-2.6) (16.5 years)
License Artistic-2.0
Depends Rgraphviz, graph
Imports Rgraphviz, geneplotter, graph, BiocGenerics, methods
System Requirements
URL
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Suggests fibroEset, geneplotter, hgu95av2.db
Linking To
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Depends On Me
Imports Me
Suggests Me EnrichmentBrowser
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biocGraph_1.64.0.tar.gz
Windows Binary biocGraph_1.64.0.zip
macOS Binary (x86_64) biocGraph_1.64.0.tgz
macOS Binary (arm64) biocGraph_1.64.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biocGraph
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biocGraph
Bioc Package Browser https://code.bioconductor.org/browse/biocGraph/
Package Short Url https://bioconductor.org/packages/biocGraph/
Package Downloads Report Download Stats