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biocGraph

This is the released version of biocGraph; for the devel version, see biocGraph.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Graph examples and use cases in Bioinformatics


Bioconductor version: Release (3.23)

This package provides examples and code that make use of the different graph related packages produced by Bioconductor.

Author: Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sethf at fhcrc.org> Florian Hahne <fhahne at fhcrc.org>

Maintainer: Florian Hahne <florian.hahne at novartis.com>

Citation (from within R, enter citation("biocGraph")):

Li Long, Robert Gentleman, Seth Falcon Florian Hahne. biocGraph: Graph examples and use cases in Bioinformatics. doi:10.18129/B9.bioc.biocGraph, R package version 1.74.0, https://bioconductor.org/packages/biocGraph.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biocGraph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biocGraph")
Examples of plotting graphs Using Rgraphviz PDF R Script
HOWTO layout pathways PDF R Script
Reference ManualPDF

Details

biocViews GraphAndNetwork, Software, Visualization
Version1.74.0
In Bioconductor sinceBioC 2.1 (R-2.6) (19 years)
License Artistic-2.0
Depends Rgraphviz, graph
Imports Rgraphviz, geneplotter, graph, BiocGenerics, methods
System Requirements
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Suggests fibroEset, geneplotter, hgu95av2.db
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biocGraph_1.74.0.tar.gz
Windows Binary (x86_64) biocGraph_1.74.0.zip
macOS Binary (big-sur-x86_64) biocGraph_1.74.0.tgz
macOS Binary (sonoma-arm64) biocGraph_1.74.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/biocGraph
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/biocGraph
Package Short Url https://bioconductor.org/packages/biocGraph/
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