epivizrData

DOI: 10.18129/B9.bioc.epivizrData    

Data Management API for epiviz interactive visualization app

Bioconductor version: Release (3.8)

Serve data from Bioconductor Objects through a WebSocket connection.

Author: Hector Corrada Bravo [aut, cre], Florin Chelaru [aut]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrData")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("epivizrData", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrData")

 

HTML R Script Vignette Title
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Infrastructure, Software, Visualization
Version 1.10.0
In Bioconductor since BioC 3.3 (R-3.3) (2.5 years)
License MIT + file LICENSE
Depends R (>= 3.4), methods, epivizrServer(>= 1.1.1), Biobase
Imports S4Vectors, GenomicRanges, SummarizedExperiment(>= 0.2.0), OrganismDbi, GenomicFeatures, GenomeInfoDb, IRanges, ensembldb
LinkingTo
Suggests testthat, roxygen2, bumphunter, hgu133plus2.db, Mus.musculus, TxDb.Mmusculus.UCSC.mm10.knownGene, rjson, knitr, rmarkdown, BiocStyle, EnsDb.Mmusculus.v79, AnnotationHub, rtracklayer, utils, RMySQL, DBI
SystemRequirements
Enhances
URL http://epiviz.github.io
BugReports https://github.com/epiviz/epivizrData/issues
Depends On Me
Imports Me epivizr, epivizrChart, metavizr
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package epivizrData_1.10.0.tar.gz
Windows Binary epivizrData_1.10.0.zip
Mac OS X 10.11 (El Capitan) epivizrData_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/epivizrData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epivizrData
Package Short Url http://bioconductor.org/packages/epivizrData/
Package Downloads Report Download Stats

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