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UNDO

Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions


Bioconductor version: Release (3.18)

UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.

Author: Niya Wang <wangny at vt.edu>

Maintainer: Niya Wang <wangny at vt.edu>

Citation (from within R, enter citation("UNDO")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("UNDO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UNDO")
UNDO Usage PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software
Version 1.44.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL-2
Depends R (>= 2.15.2), methods, BiocGenerics, Biobase
Imports MASS, boot, nnls, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package UNDO_1.44.0.tar.gz
Windows Binary UNDO_1.44.0.zip
macOS Binary (x86_64) UNDO_1.44.0.tgz
macOS Binary (arm64) UNDO_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/UNDO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/UNDO
Bioc Package Browser https://code.bioconductor.org/browse/UNDO/
Package Short Url https://bioconductor.org/packages/UNDO/
Package Downloads Report Download Stats