TargetSearch

This is the released version of TargetSearch; for the devel version, see TargetSearch.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

A package for the analysis of GC-MS metabolite profiling data

Bioconductor version: Release (3.23)

This packages provides a flexible, fast and accurate method for targeted pre-processing of GC-MS data. The user provides a (often very large) set of GC chromatograms and a metabolite library of targets. The package will automatically search those targets in the chromatograms resulting in a data matrix that can be used for further data analysis.

Author: Alvaro Cuadros-Inostroza [aut, cre], Jan Lisec [aut], Henning Redestig [aut], Matt Hannah [aut]

Maintainer: Alvaro Cuadros-Inostroza <acuadros+bioc at gmail.com>

Citation (from within R, enter citation("TargetSearch")):

Alvaro Cuadros-Inostroza, Jan Lisec, Henning Redestig, Matt Hannah. TargetSearch: A package for the analysis of GC-MS metabolite profiling data. doi:10.18129/B9.bioc.TargetSearch, R package version 2.14.0, https://bioconductor.org/packages/TargetSearch.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TargetSearch")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TargetSearch")

RI correction extra	PDF	R Script
The TargetSearch Package	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DecisionTree, ImmunoOncology, MassSpectrometry, Preprocessing, Software
Version	2.14.0
In Bioconductor since	BioC 2.4 (R-2.9) (17.5 years)
License	GPL (>= 2)
Depends
Imports	graphics, grDevices, methods, ncdf4, stats, utils, assertthat
System Requirements
URL	https://github.com/acinostroza/TargetSearch
Bug Reports	https://github.com/acinostroza/TargetSearch/issues

Suggests	TargetSearchData, BiocStyle, knitr, tinytest
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TargetSearch_2.14.0.tar.gz
Windows Binary (x86_64)	TargetSearch_2.14.0.zip
macOS Binary (big-sur-x86_64)	TargetSearch_2.14.0.tgz
macOS Binary (sonoma-arm64)	TargetSearch_2.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TargetSearch
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TargetSearch
Package Short Url	https://bioconductor.org/packages/TargetSearch/
Package Downloads Report	Download Stats