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Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Bioconductor version: Release (3.18)

MSstatsConvert provides tools for importing reports of Mass Spectrometry data processing tools into R format suitable for statistical analysis using the MSstats and MSstatsTMT packages.

Author: Mateusz Staniak [aut, cre], Meena Choi [aut], Ting Huang [aut], Olga Vitek [aut]

Maintainer: Mateusz Staniak <mtst at mstaniak.pl>

Citation (from within R, enter citation("MSstatsConvert")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Working with MSstatsConvert HTML R Script
Reference Manual PDF


biocViews DataImport, MassSpectrometry, Proteomics, QualityControl, Software
Version 1.12.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports data.table, log4r, methods, checkmate, utils, stringi
System Requirements
See More
Suggests tinytest, covr, knitr, rmarkdown
Linking To
Depends On Me
Imports Me MSstats, MSstatsBig, MSstatsLiP, MSstatsPTM, MSstatsShiny, MSstatsTMT
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSstatsConvert_1.12.0.tar.gz
Windows Binary MSstatsConvert_1.12.0.zip
macOS Binary (x86_64) MSstatsConvert_1.12.0.tgz
macOS Binary (arm64) MSstatsConvert_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSstatsConvert
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSstatsConvert
Bioc Package Browser https://code.bioconductor.org/browse/MSstatsConvert/
Package Short Url https://bioconductor.org/packages/MSstatsConvert/
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