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MSstatsBig

MSstats Preprocessing for Larger than Memory Data


Bioconductor version: Release (3.18)

MSstats package provide tools for preprocessing, summarization and differential analysis of mass spectrometry (MS) proteomics data. Recently, some MS protocols enable acquisition of data sets that result in larger than memory quantitative data. MSstats functions are not able to process such data. MSstatsBig package provides additional converter functions that enable processing larger than memory data sets.

Author: Mateusz Staniak [aut, cre], Devon Kohler [aut]

Maintainer: Mateusz Staniak <mtst at mstaniak.pl>

Citation (from within R, enter citation("MSstatsBig")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSstatsBig")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsBig")
MSstatsBig Workflow HTML R Script
Reference Manual PDF

Details

biocViews MassSpectrometry, Proteomics, Software
Version 1.0.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License Artistic-2.0
Depends
Imports arrow, DBI, dplyr, MSstats, MSstatsConvert, readr, sparklyr, utils
System Requirements
URL
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Suggests knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSstatsBig_1.0.0.tar.gz
Windows Binary MSstatsBig_1.0.0.zip
macOS Binary (x86_64) MSstatsBig_1.0.0.tgz
macOS Binary (arm64) MSstatsBig_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSstatsBig
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSstatsBig
Bioc Package Browser https://code.bioconductor.org/browse/MSstatsBig/
Package Short Url https://bioconductor.org/packages/MSstatsBig/
Package Downloads Report Download Stats