MDTS

DOI: 10.18129/B9.bioc.MDTS    

Detection of de novo deletion in targeted sequencing trios

Bioconductor version: Release (3.7)

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

Author: Jack M.. Fu [aut, cre]

Maintainer: Jack M.. Fu <jmfu at jhsph.edu>

Citation (from within R, enter citation("MDTS")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MDTS")

Documentation

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Details

biocViews Coverage, DataImport, Sequencing, Software, StatisticalMethod, TargetedResequencing, Technology
Version 1.0.1
License Artistic-2.0
Depends R (>= 3.5.0)
Imports GenomicAlignments, GenomicRanges, IRanges, Biostrings, DNAcopy, Rsamtools, parallel, stringr
LinkingTo
Suggests testthat, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MDTS_1.0.1.tar.gz
Windows Binary MDTS_1.0.1.zip
Mac OS X 10.11 (El Capitan) MDTS_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/MDTS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MDTS
Package Short Url http://bioconductor.org/packages/MDTS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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