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Storing and accessing epitranscriptomic information using the AnnotationDbi interface

Bioconductor version: Release (3.19)

EpiTxDb facilitates the storage of epitranscriptomic information. More specifically, it can keep track of modification identity, position, the enzyme for introducing it on the RNA, a specifier which determines the position on the RNA to be modified and the literature references each modification is associated with.

Author: Felix G.M. Ernst [aut, cre]

Maintainer: Felix G.M. Ernst < at>

Citation (from within R, enter citation("EpiTxDb")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

EpiTxDb HTML R Script
EpiTxDb-creation HTML R Script
Reference Manual PDF


biocViews Epitranscriptomics, Software
Version 1.16.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License Artistic-2.0
Depends R (>= 4.0), AnnotationDbi, Modstrings
Imports methods, utils, httr, xml2, curl, rex, GenomicFeatures, txdbmaker, GenomicRanges, GenomeInfoDb, BiocGenerics, BiocFileCache, S4Vectors, IRanges, RSQLite, DBI, Biostrings, tRNAdbImport
System Requirements
Bug Reports
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Suggests BiocStyle, knitr, rmarkdown, testthat, httptest, AnnotationHub, ensembldb, ggplot2, EpiTxDb.Hs.hg38, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Scerevisiae.UCSC.sacCer3, TxDb.Hsapiens.UCSC.hg38.knownGene
Linking To
Depends On Me EpiTxDb.Hs.hg38, EpiTxDb.Mm.mm10, EpiTxDb.Sc.sacCer3
Imports Me
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EpiTxDb_1.16.0.tar.gz
Windows Binary
macOS Binary (x86_64) EpiTxDb_1.16.0.tgz
macOS Binary (arm64) EpiTxDb_1.16.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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