EpiTxDb
Storing and accessing epitranscriptomic information using the AnnotationDbi interface
Bioconductor version: 3.23 · Package version: 1.24.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
EpiTxDb facilitates the storage of epitranscriptomic information. More specifically, it can keep track of modification identity, position, the enzyme for introducing it on the RNA, a specifier which determines the position on the RNA to be modified and the literature references each modification is associated with.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EpiTxDb")Details
| Maintainer | Felix G.M. Ernst <felix.gm.ernst@outlook.com> |
| Author | Felix G.M. Ernst [aut, cre] (ORCID: <https://orcid.org/0000-0001-5064-0928>) |
| License | Artistic-2.0 |
| URL | https://github.com/FelixErnst/EpiTxDb |
| Bug Reports | https://github.com/FelixErnst/EpiTxDb/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Epitranscriptomics, Software |
| Package Short Url | https://bioconductor.org/packages/EpiTxDb/ |
Citation
From within R, enter citation("EpiTxDb"):
Felix G.M. Ernst. EpiTxDb: Storing and accessing epitranscriptomic information using the AnnotationDbi interface. doi:10.18129/B9.bioc.EpiTxDb, R package version 1.24.0, https://bioconductor.org/packages/EpiTxDb.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
- EpiTxDb: Storing and accessing epitranscriptomic information using the AnnotationDbi interface
- EpiTxDb: creating an EpiTxDb object
Download
Follow the installation instructions to use this package in your R session.
| Source package | EpiTxDb_1.24.0.tar.gz |
| Windows binary (x86_64) | EpiTxDb_1.24.0.zip |
| macOS binary (arm64) | EpiTxDb_1.24.0.tgz |
| macOS binary (x86_64) | EpiTxDb_1.24.0.tgz |
Dependencies
Depends: R (>= 4.0), AnnotationDbi, Modstrings
Imports: methods, utils, httr, xml2, curl, rex, GenomicFeatures, txdbmaker, GenomicRanges, Seqinfo, BiocGenerics, BiocFileCache, S4Vectors, IRanges, RSQLite, DBI, Biostrings, tRNAdbImport
Suggests: BiocStyle, knitr, rmarkdown, testthat, httptest, AnnotationHub, ensembldb, ggplot2, EpiTxDb.Hs.hg38, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Scerevisiae.UCSC.sacCer3, TxDb.Hsapiens.UCSC.hg38.knownGene
Reverse dependencies
Depends On Me (3): EpiTxDb.Hs.hg38, EpiTxDb.Mm.mm10, EpiTxDb.Sc.sacCer3