CircSeqAlignTk
End-to-End Analysis of Small RNA-Seq Data from Viroids
Bioconductor version: 3.23 · Package version: 1.14.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
CircSeqAlignTk is a toolkit for the analysis of RNA-Seq data derived from circular genome sequences, with a primary focus on viroids, circular RNAs typically consisting of a few hundred nucleotides. The toolkit supports an end-to-end analysis pipeline, from alignment to visualization.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CircSeqAlignTk")Details
| Maintainer | Jianqiang Sun <sun@bitdessin.dev> |
| Author | Jianqiang Sun [cre, aut] (ORCID: <https://orcid.org/0000-0002-3438-3199>), Xi Fu [ctb], Wei Cao [ctb] |
| License | MIT + file LICENSE |
| URL | https://github.com/bitdessin/CircSeqAlignTk |
| Bug Reports | https://github.com/bitdessin/CircSeqAlignTk/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Alignment, Sequencing, SmallRNA, Software |
| Package Short Url | https://bioconductor.org/packages/CircSeqAlignTk/ |
Citation
From within R, enter citation("CircSeqAlignTk"):
Jianqiang Sun. CircSeqAlignTk: End-to-End Analysis of Small RNA-Seq Data from Viroids. doi:10.18129/B9.bioc.CircSeqAlignTk, R package version 1.14.0, https://bioconductor.org/packages/CircSeqAlignTk.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CircSeqAlignTk_1.14.0.tar.gz |
| macOS binary (arm64) | CircSeqAlignTk_1.14.0.tgz |
| macOS binary (x86_64) | CircSeqAlignTk_1.14.0.tgz |