To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rbowtie2")

In most cases, you don't need to download the package archive at all.

Rbowtie2

DOI: 10.18129/B9.bioc.Rbowtie2    

An R Wrapper for Bowtie2 and AdapterRemoval

Bioconductor version: Release (3.6)

This package provides an R wrapper of the popular bowtie2 sequencing reads aligner and AdapterRemoval, a convenient tool for rapid adapter trimming, identification, and read merging.

Author: Zheng Wei, Wei Zhang

Maintainer: Zheng Wei <wzweizheng at qq.com>

Citation (from within R, enter citation("Rbowtie2")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rbowtie2")

Documentation

HTML R Script An Introduction to Rbowtie2
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Preprocessing, Sequencing, Software
Version 1.0.1
License GPL (>= 3)
Depends R (>= 3.4.1)
Imports
LinkingTo
Suggests knitr
SystemRequirements C++11
Enhances
URL
Depends On Me
Imports Me esATAC
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rbowtie2_1.0.1.tar.gz
Windows Binary Rbowtie2_1.0.1.zip (64-bit only)
Mac OS X 10.11 (El Capitan) Rbowtie2_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rbowtie2
Package Short Url http://bioconductor.org/packages/Rbowtie2/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: