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quantsmooth

This is the released version of quantsmooth; for the devel version, see quantsmooth.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Quantile smoothing and genomic visualization of array data


Bioconductor version: Release (3.23)

Implements quantile smoothing as introduced in: Quantile smoothing of array CGH data; Eilers PH, de Menezes RX; Bioinformatics. 2005 Apr 1;21(7):1146-53.

Author: Jan Oosting, Paul Eilers, Renee Menezes

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Citation (from within R, enter citation("quantsmooth")):

Jan Oosting, Paul Eilers, Renee Menezes. quantsmooth: Quantile smoothing and genomic visualization of array data. doi:10.18129/B9.bioc.quantsmooth, R package version 1.78.0, https://bioconductor.org/packages/quantsmooth.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("quantsmooth")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("quantsmooth")
quantsmooth PDF R Script
Reference ManualPDF

Details

biocViews CopyNumberVariation, Software, Visualization
Version1.78.0
In Bioconductor sinceBioC 1.9 (R-2.4) (20 years)
License GPL-2
Depends R (>= 2.10.0), quantreg, grid
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me GWASTools, SIM
Suggests Me PREDA
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package quantsmooth_1.78.0.tar.gz
Windows Binary (x86_64) quantsmooth_1.78.0.zip
macOS Binary (big-sur-x86_64) quantsmooth_1.78.0.tgz
macOS Binary (sonoma-arm64) quantsmooth_1.78.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/quantsmooth
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/quantsmooth
Package Short Url https://bioconductor.org/packages/quantsmooth/
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