prebsdata

This is the released version of prebsdata; for the devel version, see prebsdata.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12

Data for 'prebs' package

Bioconductor version: Release (3.23)

This package contains data required to run examples in 'prebs' package. The data files include: 1) Small sample bam files for demonstration purposes 2) Probe sequence mappings for Custom CDF (taken from http://brainarray.mbni.med.umich.edu/brainarray/Database/CustomCDF/genomic_curated_CDF.asp) 3) Probe sequence mappings for manufacturer's CDF (manually created using bowtie)

Author: Karolis Uziela and Antti Honkela

Maintainer: Karolis Uziela <karolis.uziela at scilifelab.se>

Citation (from within R, enter citation("prebsdata")):

Karolis Uziela and Antti Honkela. prebsdata: Data for 'prebs' package. doi:10.18129/B9.bioc.prebsdata, R package version 1.48.0, https://bioconductor.org/packages/prebsdata.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("prebsdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("prebsdata")

prebsdata User Guide	PDF
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, RNASeqData, SequencingData
Version	1.48.0
In Bioconductor since	BioC 2.12 (R-3.0) (13.5 years)
License	Artistic-2.0
Depends	R (>= 2.14.0)
Imports
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	prebs, SigFuge
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	prebsdata_1.48.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/prebsdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/prebsdata
Package Short Url	https://bioconductor.org/packages/prebsdata/
Package Downloads Report	Download Stats