MouseGastrulationData

DOI: 10.18129/B9.bioc.MouseGastrulationData    

This is the development version of MouseGastrulationData; for the stable release version, see MouseGastrulationData.

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Bioconductor version: Development (3.15)

Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.

Author: Jonathan Griffiths <jonathan.griffiths.94 at gmail.com>, Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Maintainer: Jonathan Griffiths <jonathan.griffiths.94 at gmail.com>

Citation (from within R, enter citation("MouseGastrulationData")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MouseGastrulationData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData, SequencingData, SingleCellData
Version 1.7.0
License GPL-3
Depends R (>= 4.1), SingleCellExperiment, SummarizedExperiment, SpatialExperiment
Imports methods, ExperimentHub, BiocGenerics, S4Vectors, BumpyMatrix
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/MarioniLab/MouseGastrulationData
BugReports https://github.com/MarioniLab/MouseGastrulationData/issues
Depends On Me
Imports Me
Suggests Me miloR
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/MouseGastrulationData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MouseGastrulationData
Package Short Url https://bioconductor.org/packages/MouseGastrulationData/
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