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DmelSGI

This is the development version of DmelSGI; for the stable release version, see DmelSGI.

Experimental data and documented source code for the paper "A Map of Directional Genetic Interactions in a Metazoan Cell"


Bioconductor version: Development (3.19)

The package contains the experimental data and documented source code of the manuscript "Fischer et al., A Map of Directional Genetic Interactions in a Metazoan Cell, eLife, 2015, in Press.". The vignette code generates all figures in the paper.

Author: Bernd Fischer [aut], Wolfgang Huber [ctb], Mike Smith [cre]

Maintainer: Mike Smith <mike.smith at embl.de>

Citation (from within R, enter citation("DmelSGI")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DmelSGI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DmelSGI")
DmelSGI PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellCulture, Drosophila_melanogaster_Data, ExperimentData, HighThroughputImagingData, HighthroughputImagingData, MicrotitrePlateAssayData, ReproducibleResearch
Version 1.35.0
License Artistic-2.0
Depends R (>= 3.0)
Imports grid, TSP, limma, rhdf5, knitr, abind, gplots, igraph, grDevices, graphics, stats
System Requirements
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Suggests BiocStyle, EBImage, RColorBrewer, RNAinteractMAPK, hwriter, xtable, beeswarm
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DmelSGI_1.35.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/DmelSGI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DmelSGI
Package Short Url https://bioconductor.org/packages/DmelSGI/
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