EBImage
This is the development version of EBImage; for the stable release version, see EBImage.
Image processing and analysis toolbox for R
Bioconductor version: Development (3.20)
EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.
Author: Andrzej Oleś, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais
Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>
citation("EBImage")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("EBImage")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EBImage")
Introduction to EBImage | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Software, Visualization |
Version | 4.47.1 |
In Bioconductor since | BioC 1.8 (R-2.3) (18.5 years) |
License | LGPL |
Depends | methods |
Imports | BiocGenerics(>= 0.7.1), graphics, grDevices, stats, abind, tiff, jpeg, png, locfit, fftwtools (>= 0.9-7), utils, htmltools, htmlwidgets, RCurl |
System Requirements | |
URL | https://github.com/aoles/EBImage |
Bug Reports | https://github.com/aoles/EBImage/issues |
See More
Suggests | BiocStyle, digest, knitr, rmarkdown, shiny |
Linking To | |
Enhances | |
Depends On Me | CRImage, cytomapper, flowcatchR, DonaPLLP2013, furrowSeg, MerfishData, GiNA, nucim |
Imports Me | bnbc, Cardinal, CatsCradle, cytoviewer, flowCHIC, heatmaps, imcRtools, MoleculeExperiment, RBioFormats, simpleSeg, SpatialFeatureExperiment, SpatialOmicsOverlay, synapsis, xenLite, yamss, BioImageDbs, bioimagetools, GoogleImage2Array, LFApp, LOMAR, RockFab, SAFARI |
Suggests Me | HilbertVis, DmelSGI, spicyWorkflow, aroma.core, cooltools, ExpImage, glow, ijtiff, juicr, lidR, metagear, pliman, rcaiman, SIPmg |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | EBImage_4.47.1.tar.gz |
Windows Binary (x86_64) | EBImage_4.47.1.zip |
macOS Binary (x86_64) | EBImage_4.47.1.tgz |
macOS Binary (arm64) | EBImage_4.47.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/EBImage |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EBImage |
Bioc Package Browser | https://code.bioconductor.org/browse/EBImage/ |
Package Short Url | https://bioconductor.org/packages/EBImage/ |
Package Downloads Report | Download Stats |