Bioconductor Developer Survey 2026 Now Open!

FeatSeekR

This is the development version of FeatSeekR; for the stable release version, see FeatSeekR.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

FeatSeekR an R package for unsupervised feature selection


Bioconductor version: Development (3.24)

FeatSeekR performs unsupervised feature selection using replicated measurements. It iteratively selects features with the highest reproducibility across replicates, after projecting out those dimensions from the data that are spanned by the previously selected features. The selected a set of features has a high replicate reproducibility and a high degree of uniqueness.

Author: Tuemay Capraz [cre, aut] ORCID iD ORCID: 0000-0002-2547-067X

Maintainer: Tuemay Capraz <tuemay.capraz at embl.de>

Citation (from within R, enter citation("FeatSeekR")):

Tuemay Capraz. FeatSeekR: FeatSeekR an R package for unsupervised feature selection. doi:10.18129/B9.bioc.FeatSeekR, R package version 1.13.0, https://bioconductor.org/packages/FeatSeekR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("FeatSeekR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FeatSeekR")
`FeatSeekR` user guide HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews FeatureExtraction, MassSpectrometry, Software, StatisticalMethod
Version1.13.0
In Bioconductor sinceBioC 3.17 (R-4.3) (3.5 years)
License GPL-3
Depends
Imports pheatmap, MASS, pracma, stats, SummarizedExperiment, methods
System Requirements
URLhttps://github.com/tcapraz/FeatSeekR
Bug Reportshttps://github.com/tcapraz/FeatSeekR/issues
See More
Suggests rmarkdown, knitr, BiocStyle, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FeatSeekR_1.13.0.tar.gz
Windows Binary (x86_64) FeatSeekR_1.13.0.zip
macOS Binary (big-sur-x86_64) FeatSeekR_1.13.0.tgz
macOS Binary (sonoma-arm64) FeatSeekR_1.13.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/FeatSeekR
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/FeatSeekR
Package Short Url https://bioconductor.org/packages/FeatSeekR/
Package Downloads ReportDownload Stats