tenXplore

This is the development version of tenXplore; for the stable release version, see tenXplore.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics

Bioconductor version: Development (3.24)

Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("tenXplore")):

Vince Carey. tenXplore: ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics. doi:10.18129/B9.bioc.tenXplore, R package version 1.35.0, https://bioconductor.org/packages/tenXplore.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("tenXplore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tenXplore")

tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DimensionReduction, ImmunoOncology, PrincipalComponent, SingleCell, Software, Transcriptomics
Version	1.35.0
In Bioconductor since	BioC 3.6 (R-3.4) (9 years)
License	Artistic-2.0
Depends	R (>= 4.0), shiny
Imports	methods, ontoProc (>= 0.99.7), SummarizedExperiment, AnnotationDbi, matrixStats, org.Mm.eg.db, stats, utils, BiocFileCache
System Requirements
URL

Suggests	org.Hs.eg.db, testthat, knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tenXplore_1.35.0.tar.gz
Windows Binary (x86_64)	tenXplore_1.35.0.zip
macOS Binary (big-sur-x86_64)	tenXplore_1.35.0.tgz
macOS Binary (sonoma-arm64)	tenXplore_1.35.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tenXplore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tenXplore
Package Short Url	https://bioconductor.org/packages/tenXplore/
Package Downloads Report	Download Stats