tenXplore
ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics
Bioconductor version: Release (3.19)
Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.
Author: Vince Carey
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("tenXplore")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tenXplore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tenXplore")
tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons | HTML | R Script |
Reference Manual |
Details
biocViews | DimensionReduction, ImmunoOncology, PrincipalComponent, SingleCell, Software, Transcriptomics |
Version | 1.26.2 |
In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
License | Artistic-2.0 |
Depends | R (>= 4.0), shiny |
Imports | methods, ontoProc(>= 0.99.7), SummarizedExperiment, AnnotationDbi, matrixStats, org.Mm.eg.db, stats, utils, BiocFileCache |
System Requirements | |
URL |
See More
Suggests | org.Hs.eg.db, testthat, knitr, rmarkdown, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | tenXplore_1.26.2.tar.gz |
Windows Binary | tenXplore_1.26.2.zip (64-bit only) |
macOS Binary (x86_64) | tenXplore_1.26.2.tgz |
macOS Binary (arm64) | tenXplore_1.26.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/tenXplore |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tenXplore |
Bioc Package Browser | https://code.bioconductor.org/browse/tenXplore/ |
Package Short Url | https://bioconductor.org/packages/tenXplore/ |
Package Downloads Report | Download Stats |