org.Mm.eg.db

This is the development version of org.Mm.eg.db; for the stable release version, see org.Mm.eg.db.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Genome wide annotation for Mouse

Bioconductor version: Development (3.24)

Genome wide annotation for Mouse, primarily based on mapping using Entrez Gene identifiers.

Author: Bioconductor Core Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("org.Mm.eg.db")):

Bioconductor Core Team. org.Mm.eg.db: Genome wide annotation for Mouse. doi:10.18129/B9.bioc.org.Mm.eg.db, R package version 3.24.4, https://bioconductor.org/packages/org.Mm.eg.db.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("org.Mm.eg.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AnnotationData, OrgDb, annotation
Version	3.24.4
In Bioconductor since	BioC 2.5 (R-2.10) or earlier (> 17 years)
License	Artistic-2.0
Depends	R (>= 2.7.0), methods, AnnotationDbi (>= 1.75.2)
Imports
System Requirements
URL

Suggests	DBI, annotate, RUnit
Linking To
Enhances
Depends On Me	clariomsmousehttranscriptcluster.db, clariomsmousetranscriptcluster.db, csawBook, htmg430a.db, htmg430b.db, htmg430pm.db, illuminaMousev1.db, illuminaMousev1p1.db, illuminaMousev2.db, lumiMouseAll.db, m10kcod.db, m20kcod.db, mgu74a.db, mgu74av2.db, mgu74b.db, mgu74bv2.db, mgu74c.db, mgu74cv2.db, mguatlas5k.db, mgug4104a.db, mgug4120a.db, mgug4121a.db, mgug4122a.db, mi16cod.db, mm24kresogen.db, MmAgilentDesign026655.db, moe430a.db, moe430b.db, moex10stprobeset.db, moex10sttranscriptcluster.db, mogene10stprobeset.db, mogene10sttranscriptcluster.db, mogene11stprobeset.db, mogene11sttranscriptcluster.db, mogene20stprobeset.db, mogene20sttranscriptcluster.db, mogene21stprobeset.db, mogene21sttranscriptcluster.db, mouse4302.db, mouse430a2.db, mpedbarray.db, mta10probeset.db, mta10transcriptcluster.db, mu11ksuba.db, mu11ksubb.db, Mu15v1.db, mu19ksuba.db, mu19ksubb.db, mu19ksubc.db, Mu22v3.db, Mus.musculus, mwgcod.db, nugomm1a520177.db, OSCA.advanced, OSCA.workflows, RnaSeqGeneEdgeRQL
Imports Me	APL, cellity, chimeraviz, chipenrich, CoSIA, EasyCellType, EGSEA, exploreSE, fourSynergy, gINTomics, GmicR, goatea, msigdb, postNet, profileplyr, Rmmquant, rTRMui, scPipe, tenXplore, TFEA.ChIP
Suggests Me	annotate, annotatr, artMS, autonomics, CAGEfightR, CAGEWorkflow, CellTrails, chipenrich.data, chipseqDB, ClusterGVis, CMEnt, compEpiTools, conos, convertid, coreheat, CRISPRseek, csaw, daVis, debrowser, destiny, diffwrap, dmGsea, DOSE, enhancerHomologSearch, epiRomics, ExpHunterSuite, FELLA, fgsea, gatom, gCrisprTools, GenomicFeatures, goat, goSorensen, GRaNIE, iNETgrate, IOBR, iSEEfier, isomiRs, karyoploteR, limorhyde, MLP, multiGSEA, NanoMethViz, NetSAM, NoRCE, ontoProc, pagoda2, pathview, phantasus, PhosR, Pigengene, ReportingTools, rGREAT, RnBeads, rrvgo, rTRM, scGraphVerse, scPairs, scQTLtools, scrapper, simpleSingleCell, singleCellTK, spatialHeatmap, SpliceImpactR, SurprisalAnalysis, TiDEomics, tidybulk, tinyarray, tricycle, ViSEAGO, vissE, VISTA
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	org.Mm.eg.db_3.24.4.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Package Short Url	https://bioconductor.org/packages/org.Mm.eg.db/
Package Downloads Report	Download Stats