rTRM
This is the development version of rTRM; for the stable release version, see rTRM.
Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks
Bioconductor version: Development (3.20)
rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz at gmail.com>
Citation (from within R, enter
citation("rTRM")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rTRM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rTRM")
Introduction to rTRM | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | GeneRegulation, GraphAndNetwork, Network, Software, Transcription |
Version | 1.43.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
License | GPL-3 |
Depends | R (>= 2.10), igraph (>= 1.0) |
Imports | methods, AnnotationDbi, DBI, RSQLite |
System Requirements | |
URL | https://github.com/ddiez/rTRM |
Bug Reports | https://github.com/ddiez/rTRM/issues |
See More
Suggests | RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2, BiocStyle, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | rTRMui |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | rTRM_1.43.0.tar.gz |
Windows Binary | rTRM_1.43.0.zip (64-bit only) |
macOS Binary (x86_64) | rTRM_1.43.0.tgz |
macOS Binary (arm64) | rTRM_1.43.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/rTRM |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rTRM |
Bioc Package Browser | https://code.bioconductor.org/browse/rTRM/ |
Package Short Url | https://bioconductor.org/packages/rTRM/ |
Package Downloads Report | Download Stats |