rTRM
Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks
Bioconductor version: 3.24 · Package version: 1.51.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rTRM")Details
| Maintainer | Diego Diez <diego10ruiz@gmail.com> |
| Author | Diego Diez |
| License | GPL-3 |
| URL | https://github.com/ddiez/rTRM |
| Bug Reports | https://github.com/ddiez/rTRM/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneRegulation, GraphAndNetwork, Network, Software, Transcription |
| Package Short Url | https://bioconductor.org/packages/rTRM/ |
Citation
From within R, enter citation("rTRM"):
Diego Diez. rTRM: Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks. doi:10.18129/B9.bioc.rTRM, R package version 1.51.0, https://bioconductor.org/packages/rTRM.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | rTRM_1.51.0.tar.gz |
| macOS binary (arm64) | rTRM_1.51.0.tgz |
| macOS binary (x86_64) | rTRM_1.51.0.tgz |
Dependencies
Depends: R (>= 2.10), igraph (>= 1.0)
Imports: methods, AnnotationDbi, DBI, RSQLite
Suggests: RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2, BiocStyle, knitr, rmarkdown
Reverse dependencies
Imports Me (1): rTRMui