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polyester

This is the development version of polyester; for the stable release version, see polyester.

Simulate RNA-seq reads


Bioconductor version: Development (3.19)

This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.

Author: Alyssa C. Frazee, Andrew E. Jaffe, Rory Kirchner, Jeffrey T. Leek

Maintainer: Jack Fu <jmfu at jhsph.edu>, Jeff Leek <jtleek at gmail.com>

Citation (from within R, enter citation("polyester")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("polyester")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("polyester")
The Polyester package for simulating RNA-seq reads HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, Sequencing, Software
Version 1.39.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends R (>= 3.0.0)
Imports Biostrings(>= 2.32.0), IRanges, S4Vectors, logspline, limma, zlibbioc
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package polyester_1.39.0.tar.gz
Windows Binary polyester_1.39.0.zip
macOS Binary (x86_64) polyester_1.39.0.tgz
macOS Binary (arm64) polyester_1.39.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/polyester
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/polyester
Bioc Package Browser https://code.bioconductor.org/browse/polyester/
Package Short Url https://bioconductor.org/packages/polyester/
Package Downloads Report Download Stats