m6Aboost

DOI: 10.18129/B9.bioc.m6Aboost    

This is the development version of m6Aboost; to use it, please install the devel version of Bioconductor.

m6Aboost

Bioconductor version: Development (3.14)

This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.

Author: You Zhou [aut, cre] , Kathi Zarnack [aut]

Maintainer: You Zhou <youzhoulearning at gmail.com>

Citation (from within R, enter citation("m6Aboost")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("m6Aboost")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("m6Aboost")

 

HTML R Script m6Aboost Vignettes
PDF   Reference Manual
Text   NEWS

Details

biocViews Epigenetics, ExperimentHubSoftware, Genetics, Sequencing, Software
Version 0.99.7
In Bioconductor since BioC 3.14 (R-4.1)
License Artistic-2.0
Depends S4Vectors, adabag, GenomicRanges, R (>= 4.1)
Imports dplyr, rtracklayer, BSgenome, Biostrings, utils, methods, IRanges, ExperimentHub
LinkingTo
Suggests knitr, rmarkdown, bookdown, testthat, BiocStyle, BSgenome.Mmusculus.UCSC.mm10
SystemRequirements
Enhances
URL https://github.com/ZarnackGroup/m6Aboost
BugReports https://github.com/ZarnackGroup/m6Aboost/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package m6Aboost_0.99.7.tar.gz
Windows Binary m6Aboost_0.99.7.zip
macOS 10.13 (High Sierra) m6Aboost_0.99.7.tgz
Source Repository git clone https://git.bioconductor.org/packages/m6Aboost
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/m6Aboost
Package Short Url https://bioconductor.org/packages/m6Aboost/
Package Downloads Report Download Stats

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