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BSgenome.Mmusculus.UCSC.mm10

This is the development version of BSgenome.Mmusculus.UCSC.mm10; for the stable release version, see BSgenome.Mmusculus.UCSC.mm10.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10

Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)


Bioconductor version: Development (3.24)

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, based on GRCm38.p6) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Mmusculus.UCSC.mm10")):

The Bioconductor Dev Team. BSgenome.Mmusculus.UCSC.mm10: Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6). doi:10.18129/B9.bioc.BSgenome.Mmusculus.UCSC.mm10, R package version 1.4.3, https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("BSgenome.Mmusculus.UCSC.mm10")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference ManualPDF
Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData, BSgenome, Genetics, Mus_musculus
Version1.4.3
In Bioconductor sinceBioC 2.10 (R-2.15) (14.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), BSgenome (>= 1.60.0)
Imports BSgenome
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me BSgenome.Mmusculus.UCSC.mm10.masked
Imports Me BSgenome.Mmusculus.UCSC.mm10.masked, epiregulon, GeneStructureTools, musicatk
Suggests Me ActiveDriverWGS, BSgenome, circRNAprofiler, cliProfiler, crisprDesign, CRISPRseek, enhancerHomologSearch, EpiCompare, factR, gcapc, GenomicRanges, GRaNIE, HiCDCPlus, InPAS, m6Aboost, MiRaGE, monaLisa, Motif2Site, MotifPeeker, mSigSpectra, multicrispr, MutSeqR, NADfinder, periodicDNA, plyinteractions, scanMiRApp, scmeth, SCOPE
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Mmusculus.UCSC.mm10_1.4.3.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Package Short Url https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/
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