gDRcore

DOI: 10.18129/B9.bioc.gDRcore  

This is the development version of gDRcore; for the stable release version, see gDRcore.

Processing functions and interface to process and analyze drug dose-response data

Bioconductor version: Development (3.19)

This package contains core functions to process and analyze drug response data. The package provides tools for normalizing, averaging, and calculation of gDR metrics data. All core functions are wrapped into the pipeline function allowing analyzing the data in a straightforward way.

Author: Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Pawel Piatkowski [aut], Natalia Potocka [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Allison Vuong [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gDRcore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDRcore")

 

HTML	R Script	gDRcore
PDF		Reference Manual
Text		NEWS

Details

biocViews	ShinyApps, Software
Version	1.1.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.2)
Imports	BumpyMatrix, BiocParallel, checkmate, futile.logger, gDRutils(>= 0.99.28), MultiAssayExperiment, purrr, stringr, S4Vectors, SummarizedExperiment, data.table
LinkingTo
Suggests	BiocStyle, gDRstyle(>= 0.99.15), gDRimport(>= 0.99.10), gDRtestData(>= 0.99.20), IRanges, knitr, pkgbuild, qs, testthat, yaml
SystemRequirements
Enhances
URL
Depends On Me	gDR
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gDRcore_1.1.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/gDRcore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gDRcore
Bioc Package Browser	https://code.bioconductor.org/browse/gDRcore/
Package Short Url	https://bioconductor.org/packages/gDRcore/
Package Downloads Report	Download Stats