gDRtestData

This is the development version of gDRtestData; for the stable release version, see gDRtestData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18

gDRtestData - R data package with testing dose response data

Bioconductor version: Development (3.24)

R package with internal dose-response test data. Package provides functions to generate input testing data that can be used as the input for gDR pipeline. It also contains qs2 files with MAE data processed by gDR.

Author: Aleksander Chlebowski [aut], Bartosz Czech [aut] ORCID: 0000-0002-9908-3007 , Arkadiusz Gladki [cre, aut] ORCID: 0000-0002-7059-6378 , Marc Hafner [aut] ORCID: 0000-0003-1337-7598 , Marcin Kamianowski [aut], Sergiu Mocanu [aut], Natalia Potocka [aut], Dariusz Scigocki [aut], Janina Smola [aut], Allison Voung [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("gDRtestData")):

Aleksander Chlebowski, Bartosz Czech, Arkadiusz Gladki, Marc Hafner, Marcin Kamianowski, Sergiu Mocanu, Natalia Potocka, Dariusz Scigocki, Janina Smola, Allison Voung. gDRtestData: gDRtestData - R data package with testing dose response data. doi:10.18129/B9.bioc.gDRtestData, R package version 1.11.9, https://bioconductor.org/packages/gDRtestData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("gDRtestData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDRtestData")

DepMap Portal Data	HTML	R Script
gDRtestData	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, TechnologyData
Version	1.11.9
In Bioconductor since	BioC 3.18 (R-4.3) (3 years)
License	Artistic-2.0
Depends	R (>= 4.2)
Imports	checkmate, data.table
System Requirements
URL	https://github.com/gdrplatform/gDRtestData https://gdrplatform.github.io/gDRtestData/
Bug Reports	https://github.com/gdrplatform/gDRtestData/issues

Suggests	BiocStyle, gDRstyle (>= 1.7.1), knitr, qs2, reshape2, rmarkdown, SummarizedExperiment, testthat, yaml
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	gDR, gDRcore, gDRimport, gDRutils
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gDRtestData_1.11.9.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/gDRtestData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gDRtestData
Package Short Url	https://bioconductor.org/packages/gDRtestData/
Package Downloads Report	Download Stats