brainflowprobes

This is the development version of brainflowprobes; for the stable release version, see brainflowprobes.

Plots and annotation for choosing BrainFlow target probe sequence


Bioconductor version: Development (3.20)

Use these functions to characterize genomic regions for BrainFlow target probe design.

Author: Amanda Price [aut, cre] , Leonardo Collado-Torres [ctb]

Maintainer: Amanda Price <amanda.joy.price at gmail.com>

Citation (from within R, enter citation("brainflowprobes")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("brainflowprobes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Coverage, ExperimentalDesign, FlowCytometry, GeneTarget, Software, Transcriptomics, Visualization
Version 1.19.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License Artistic-2.0
Depends R (>= 3.6.0)
Imports Biostrings(>= 2.52.0), BSgenome.Hsapiens.UCSC.hg19(>= 1.4.0), bumphunter(>= 1.26.0), cowplot (>= 1.0.0), derfinder(>= 1.18.1), derfinderPlot(>= 1.18.1), GenomicRanges(>= 1.36.0), ggplot2 (>= 3.1.1), RColorBrewer (>= 1.1), utils, grDevices, GenomicState(>= 0.99.7)
System Requirements
URL https://github.com/LieberInstitute/brainflowprobes
Bug Reports https://support.bioconductor.org/t/brainflowprobes
See More
Suggests BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 2.1.0), covr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary brainflowprobes_1.19.0.zip (64-bit only)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/brainflowprobes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/brainflowprobes
Bioc Package Browser https://code.bioconductor.org/browse/brainflowprobes/
Package Short Url https://bioconductor.org/packages/brainflowprobes/
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