BSgenome.Hsapiens.UCSC.hg19

This is the development version of BSgenome.Hsapiens.UCSC.hg19; for the stable release version, see BSgenome.Hsapiens.UCSC.hg19.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)

Bioconductor version: Development (3.24)

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, based on GRCh37.p13) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg19")):

The Bioconductor Dev Team. BSgenome.Hsapiens.UCSC.hg19: Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13). doi:10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg19, R package version 1.4.3, https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AnnotationData, BSgenome, Genetics, Homo_sapiens
Version	1.4.3
In Bioconductor since	BioC 2.5 (R-2.10) or earlier (> 17 years)
License	Artistic-2.0
Depends	BSgenome (>= 1.54.0)
Imports	BSgenome
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	BSgenome.Hsapiens.UCSC.hg19.masked, CODEX, SCOPE, sequencing, traseR, variants
Imports Me	appreci8R, BSgenome.Hsapiens.UCSC.hg19.masked, cfDNAPro, circRNAprofiler, epiregulon, HiLDA, katdetectr, musicatk, RareVariantVis, RCAS, YAPSA
Suggests Me	ActiveDriverWGS, ATACseqQC, BadRegionFinder, Basic4Cseq, BBCAnalyzer, biovizBase, bnbc, CAGEr, ChIPpeakAnno, chromVAR, cigarillo, CNEr, CNVfilteR, CNVScope, CRISPRseek, customProDB, DAMEfinder, DNAshapeR, EpiCompare, epigraHMM, esATAC, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, FRASER, G4SNVHunter, gcapc, GenomicAlignments, GenomicFeatures, GenVisR, geomeTriD, ggbio, gmapR, GRaNIE, GreyListChIP, GUIDEseq, h5vc, HiCDCPlus, InPAS, IntEREst, IsoformSwitchAnalyzeR, karyoploteR, LACHESIS, maftools, MEDIPS, MesKit, methrix, MinimumDistance, MiRaGE, motifbreakR, motifmatchr, MotifPeeker, motifTestR, MutationalPatterns, ORFik, OrganismDbi, pageRank, pipeFrame, plotgardener, plyranges, ProteoDisco, qsea, R453Plus1Toolbox, REMP, revert, RiboCrypt, Rsamtools, RSVSim, rtracklayer, SATS, SEMPLR, SGSeq, sigminer, signeR, SigsPack, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh37, StructuralVariantAnnotation, svaNUMT, UMI4Cats, VariantAnnotation, wavClusteR, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BSgenome.Hsapiens.UCSC.hg19_1.4.3.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Package Short Url	https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/
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