TSAR

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of TSAR; for the stable release version, see TSAR.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18

Thermal Shift Analysis in R

Bioconductor version: Development (3.24)

This package automates analysis workflow for Thermal Shift Analysis (TSA) data. Processing, analyzing, and visualizing data through both shiny applications and command lines. Package aims to simplify data analysis and offer front to end workflow, from raw data to multiple trial analysis.

Author: Xinlin Gao [aut, cre] ORCID: 0009-0002-2518-235X , William M. McFadden [aut, fnd] ORCID: 0000-0001-6911-2172 , Zhijiang Ye Ye [aut, fnd] ORCID: 0009-0005-5464-7306 , Stefan G. Sarafianos [fnd, aut, ths] ORCID: 0000-0002-5840-154X

Maintainer: Xinlin Gao <candygao2015 at outlook.com>

Citation (from within R, enter citation("TSAR")):

Xinlin Gao, William M. McFadden, Zhijiang Ye Ye, Stefan G. Sarafianos. TSAR: Thermal Shift Analysis in R. doi:10.18129/B9.bioc.TSAR, R package version 1.11.1, https://bioconductor.org/packages/TSAR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("TSAR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TSAR")

Frequently Asked Questions	HTML	R Script
TSAR Package Structure	HTML	R Script
TSAR Workflow by Command	HTML	R Script
TSAR Workflow by Shiny	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ShinyApps, Software, Visualization, qPCR
Version	1.11.1
In Bioconductor since	BioC 3.18 (R-4.3) (3 years)
License	AGPL-3
Depends	R (>= 4.3.0)
Imports	dplyr (>= 1.0.7), ggplot2 (>= 3.3.5), ggpubr (>= 0.4.0), magrittr (>= 2.0.3), mgcv (>= 1.8.38), readxl (>= 1.4.0), stringr (>= 1.4.0), tidyr (>= 1.1.4), utils (>= 4.3.1), shiny (>= 1.7.4.1), plotly (>= 4.10.2), shinyjs (>= 2.1.0), jsonlite (>= 1.8.7), rhandsontable (>= 0.3.8), openxlsx (>= 4.2.5.2), shinyWidgets (>= 0.7.6), minpack.lm (>= 1.2.3)
System Requirements
URL

Suggests	knitr, rmarkdown, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TSAR_1.11.1.tar.gz
Windows Binary (x86_64)	TSAR_1.11.1.zip
macOS Binary (big-sur-x86_64)	TSAR_1.11.1.tgz
macOS Binary (sonoma-arm64)	TSAR_1.11.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TSAR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TSAR
Package Short Url	https://bioconductor.org/packages/TSAR/
Package Downloads Report	Download Stats