M3C
This is the development version of M3C; for the stable release version, see M3C.
Monte Carlo Reference-based Consensus Clustering
Bioconductor version: Development (3.20)
M3C is a consensus clustering algorithm that uses a Monte Carlo simulation to eliminate overestimation of K and can reject the null hypothesis K=1.
Author: Christopher John, David Watson
Maintainer: Christopher John <chris.r.john86 at gmail.com>
Citation (from within R, enter
citation("M3C")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("M3C")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("M3C")
M3C | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Clustering, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription |
Version | 1.27.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
License | AGPL-3 |
Depends | R (>= 3.5.0) |
Imports | ggplot2, Matrix, doSNOW, cluster, parallel, foreach, doParallel, matrixcalc, Rtsne, corpcor, umap |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | lilikoi |
Suggests Me | parameters |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | M3C_1.27.0.tar.gz |
Windows Binary (x86_64) | M3C_1.27.0.zip (64-bit only) |
macOS Binary (x86_64) | M3C_1.27.0.tgz |
macOS Binary (arm64) | M3C_1.27.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/M3C |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/M3C |
Bioc Package Browser | https://code.bioconductor.org/browse/M3C/ |
Package Short Url | https://bioconductor.org/packages/M3C/ |
Package Downloads Report | Download Stats |