M3C

This is the released version of M3C; for the devel version, see M3C.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

Monte Carlo Reference-based Consensus Clustering

Bioconductor version: Release (3.23)

M3C is a consensus clustering algorithm that uses a Monte Carlo simulation to eliminate overestimation of K and can reject the null hypothesis K=1.

Author: Christopher John, David Watson

Maintainer: Christopher John <chris.r.john86 at gmail.com>

Citation (from within R, enter citation("M3C")):

Christopher John, David Watson. M3C: Monte Carlo Reference-based Consensus Clustering. doi:10.18129/B9.bioc.M3C, R package version 1.34.0, https://bioconductor.org/packages/M3C.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("M3C")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("M3C")

M3C: Monte Carlo Reference-based Consensus Clustering	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version	1.34.0
In Bioconductor since	BioC 3.6 (R-3.4) (9 years)
License	AGPL-3
Depends	R (>= 3.5.0)
Imports	ggplot2, Matrix, doSNOW, cluster, parallel, foreach, doParallel, matrixcalc, Rtsne, corpcor, umap
System Requirements
URL

Suggests	knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me	lilikoi
Suggests Me	parameters
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	M3C_1.34.0.tar.gz
Windows Binary (x86_64)	M3C_1.34.0.zip
macOS Binary (big-sur-x86_64)	M3C_1.34.0.tgz
macOS Binary (sonoma-arm64)	M3C_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/M3C
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/M3C
Package Short Url	https://bioconductor.org/packages/M3C/
Package Downloads Report	Download Stats