DOI: 10.18129/B9.bioc.GenVisR    

This is the development version of GenVisR; for the stable release version, see GenVisR.

Genomic Visualizations in R

Bioconductor version: Development (3.9)

Produce highly customizable publication quality graphics for genomic data primarily at the cohort level.

Author: Zachary Skidmore [aut, cre], Alex Wagner [aut], Robert Lesurf [aut], Katie Campbell [aut], Jason Kunisaki [aut], Obi Griffith [aut], Malachi Griffith [aut]

Maintainer: Zachary Skidmore <zlskidmore at>

Citation (from within R, enter citation("GenVisR")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("GenVisR", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script GenVisR: An introduction
HTML R Script Visualizing Small Variants
HTML R Script waterfall: function introduction
PDF   Reference Manual
Text   NEWS


biocViews Classification, DNASeq, DataRepresentation, Infrastructure, Software
Version 1.15.3
In Bioconductor since BioC 3.3 (R-3.3) (3 years)
License GPL-3 + file LICENSE
Depends R (>= 3.3.0), methods
Imports AnnotationDbi, biomaRt, BiocGenerics, Biostrings, DBI, FField, GenomicFeatures, GenomicRanges(>= 1.25.4), ggplot2 (>= 2.1.0), grid, gridExtra (>= 2.0.0), gtable, gtools, IRanges(>= 2.7.5), plyr (>= 1.8.3), reshape2, Rsamtools, scales, stats, utils, viridis, data.table, BSgenome, grDevices, GenomeInfoDb, VariantAnnotation
Suggests BiocStyle, BSgenome.Hsapiens.UCSC.hg19, knitr, RMySQL, roxygen2, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, rmarkdown, vdiffr, formatR, TxDb.Hsapiens.UCSC.hg38.knownGene, BSgenome.Hsapiens.UCSC.hg38
Depends On Me
Imports Me
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Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package GenVisR_1.15.3.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) GenVisR_1.15.3.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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