GenVisR

This is the development version of GenVisR; for the stable release version, see GenVisR.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Genomic Visualizations in R

Bioconductor version: Development (3.24)

Produce highly customizable publication quality graphics for genomic data primarily at the cohort level.

Author: Zachary Skidmore [aut, cre], Alex Wagner [aut], Robert Lesurf [aut], Katie Campbell [aut], Jason Kunisaki [aut], Obi Griffith [aut], Malachi Griffith [aut]

Maintainer: Zachary Skidmore <zlskidmore at gmail.com>

Citation (from within R, enter citation("GenVisR")):

Zachary Skidmore, Alex Wagner, Robert Lesurf, Katie Campbell, Jason Kunisaki, Obi Griffith, Malachi Griffith. GenVisR: Genomic Visualizations in R. doi:10.18129/B9.bioc.GenVisR, R package version 1.45.0, https://bioconductor.org/packages/GenVisR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("GenVisR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenVisR")

GenVisR: An introduction	HTML	R Script
waterfall: function introduction	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Classification, DNASeq, DataRepresentation, Infrastructure, Software
Version	1.45.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.3.0), methods
Imports	AnnotationDbi, biomaRt (>= 2.45.8), BiocGenerics, Biostrings, DBI, GenomicFeatures, GenomicRanges (>= 1.25.4), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0), gtable, gtools, IRanges (>= 2.7.5), plyr (>= 1.8.3), reshape2, Rsamtools, scales, viridis, data.table, BSgenome, Seqinfo, VariantAnnotation
System Requirements
URL
Bug Reports	https://github.com/griffithlab/GenVisR/issues

Suggests	BiocStyle, BSgenome.Hsapiens.UCSC.hg19, knitr, RMySQL, roxygen2, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, rmarkdown, vdiffr, formatR, TxDb.Hsapiens.UCSC.hg38.knownGene, BSgenome.Hsapiens.UCSC.hg38
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GenVisR_1.45.0.tar.gz
Windows Binary (x86_64)	GenVisR_1.45.0.zip
macOS Binary (big-sur-x86_64)	GenVisR_1.45.0.tgz
macOS Binary (sonoma-arm64)	GenVisR_1.45.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GenVisR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GenVisR
Package Short Url	https://bioconductor.org/packages/GenVisR/
Package Downloads Report	Download Stats