BSgenome.Hsapiens.UCSC.hg38

This is the development version of BSgenome.Hsapiens.UCSC.hg38; for the stable release version, see BSgenome.Hsapiens.UCSC.hg38.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

Full genomic sequences for Homo sapiens (UCSC genome hg38)

Bioconductor version: Development (3.24)

Full genomic sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31). The sequences are stored in DNAString objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg38")):

The Bioconductor Dev Team. BSgenome.Hsapiens.UCSC.hg38: Full genomic sequences for Homo sapiens (UCSC genome hg38). doi:10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg38, R package version 1.4.5, https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AnnotationData, BSgenome, Genetics, Homo_sapiens
Version	1.4.5
In Bioconductor since	BioC 3.1 (R-3.2) (11.5 years)
License	Artistic-2.0
Depends	R (>= 4.2.0), GenomeInfoDb (>= 1.34.9), BSgenome (>= 1.66.2)
Imports
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	BSgenome.Hsapiens.UCSC.hg38.masked
Imports Me	branchpointer, cfDNAPro, decompTumor2Sig, epiregulon, katdetectr, musicatk, ORFhunteR, primirTSS, TENET
Suggests Me	ActiveDriverWGS, BSgenome, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor, bsseq, BUSpaRse, ChIPpeakAnno, circRNAprofiler, CleanUpRNAseq, CNEr, crisprBowtie, crisprBwa, crisprDesign, CRISPRseek, crisprShiny, crisprViz, DegCre, DMRcaller, DOTSeq, eisaR, enhancerHomologSearch, EpiCompare, epiSeeker, EpiTxDb, FRASER, GencoDymo2, GenomicRanges, GenomicScores, GenVisR, GRaNIE, GUIDEseq, Gviz, gwas2crispr, HiCDCPlus, MethylSeekR, MIRit, Motif2Site, motifbreakR, MotifPeeker, mSigSpectra, multicrispr, MutSeqR, nullranges, periodicDNA, pqsfinder, RAIDS, RBPSpecificity, REMP, revert, SATS, scanMiRApp, SCOPE, SEMPLR, Seqinfo, signeR, sigvar, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh38, splicelogic, TAPseq, transmogR, Ularcirc, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BSgenome.Hsapiens.UCSC.hg38_1.4.5.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Package Short Url	https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38/
Package Downloads Report	Download Stats