DOI: 10.18129/B9.bioc.ChIPComp    

This is the development version of ChIPComp; for the stable release version, see ChIPComp.

Quantitative comparison of multiple ChIP-seq datasets

Bioconductor version: Development (3.9)

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

Author: Hao Wu, Li Chen, Zhaohui S.Qin, Chi Wang

Maintainer: Li Chen <li.chen at>

Citation (from within R, enter citation("ChIPComp")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("ChIPComp", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script ChIPComp
PDF   Reference Manual
Text   NEWS


biocViews ChIPSeq, Coverage, DataImport, Genetics, MultipleComparison, Sequencing, Software, Transcription
Version 1.13.0
In Bioconductor since BioC 3.2 (R-3.2) (3.5 years)
License GPL
Depends R (>= 3.2.0), GenomicRanges, IRanges, rtracklayer, GenomeInfoDb, S4Vectors
Imports Rsamtools, limma, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BiocGenerics
Suggests BiocStyle, RUnit
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package ChIPComp_1.13.0.tar.gz
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Mac OS X 10.11 (El Capitan) ChIPComp_1.13.0.tgz
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