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ChIPComp

Quantitative comparison of multiple ChIP-seq datasets


Bioconductor version: Release (3.18)

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

Author: Hao Wu, Li Chen, Zhaohui S.Qin, Chi Wang

Maintainer: Li Chen <li.chen at emory.edu>

Citation (from within R, enter citation("ChIPComp")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChIPComp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPComp")
ChIPComp PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeq, Coverage, DataImport, Genetics, MultipleComparison, Sequencing, Software, Transcription
Version 1.32.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL
Depends R (>= 3.2.0), GenomicRanges, IRanges, rtracklayer, GenomeInfoDb, S4Vectors
Imports Rsamtools, limma, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChIPComp_1.32.0.tar.gz
Windows Binary ChIPComp_1.32.0.zip (64-bit only)
macOS Binary (x86_64) ChIPComp_1.32.0.tgz
macOS Binary (arm64) ChIPComp_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ChIPComp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChIPComp
Bioc Package Browser https://code.bioconductor.org/browse/ChIPComp/
Package Short Url https://bioconductor.org/packages/ChIPComp/
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