XVector

This is the released version of XVector; for the devel version, see XVector.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

Foundation of external vector representation and manipulation in Bioconductor

Bioconductor version: Release (3.23)

Provides memory efficient S4 classes for storing sequences "externally" (e.g. behind an R external pointer, or on disk).

Author: Hervé Pagès and Patrick Aboyoun

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("XVector")):

Hervé Pagès and Patrick Aboyoun. XVector: Foundation of external vector representation and manipulation in Bioconductor. doi:10.18129/B9.bioc.XVector, R package version 0.52.0, https://bioconductor.org/packages/XVector.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("XVector")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataRepresentation, Infrastructure, Software
Version	0.52.0
In Bioconductor since	BioC 2.13 (R-3.0) (13 years)
License	Artistic-2.0
Depends	R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), S4Vectors (>= 0.27.12), IRanges (>= 2.43.8)
Imports	methods, utils, stats, tools, BiocGenerics, S4Vectors, IRanges
System Requirements
URL	https://bioconductor.org/packages/XVector
Bug Reports	https://github.com/Bioconductor/XVector/issues

Suggests	Biostrings, drosophila2probe, RUnit
Linking To	S4Vectors, IRanges
Enhances
Depends On Me	Biostrings, triplex
Imports Me	Bioc.gff, BSgenome, ChIPsim, CNEr, compEpiTools, crisprScore, CRISPRseek, dada2, DECIPHER, gcrma, GenomAutomorphism, GenomicFeatures, Gviz, HiLDA, IONiseR, IsoformSwitchAnalyzeR, kebabs, MatrixRider, MiscMetabar, Modstrings, monaLisa, ProteoDisco, R453Plus1Toolbox, ribosomeProfilingQC, Rsamtools, rtracklayer, SparseArray, Structstrings, TFBSTools, tracktables, tRNA, tRNAscanImport, VariantAnnotation
Suggests Me	CNVMetrics, fastRanges, inDAGO, IRanges, IWTomics, LOLA, musicatk
Links To Me	Bioc.gff, Biostrings, CNEr, DECIPHER, kebabs, MatrixRider, posDemux, pwalign, Rsamtools, rtracklayer, ShortRead, SparseArray, triplex, VariantAnnotation, VariantFiltering
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	XVector_0.52.0.tar.gz
Windows Binary (x86_64)	XVector_0.52.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	XVector_0.52.0.tgz
macOS Binary (sonoma-arm64)	XVector_0.52.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/XVector
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/XVector
Package Short Url	https://bioconductor.org/packages/XVector/
Package Downloads Report	Download Stats