DMRsegaldata
This is the released version of DMRsegaldata; for the devel version, see DMRsegaldata.
Example DNAm Data for DMRsegal
Bioconductor version: Release (3.23)
Data package providing example DNA methylation files used in the DMRsegal vignette and examples. Includes a sorted beta matrix as a tab-delimited, bgzip-compressed file and a matching phenotype table. The data contains 10 healthy and 10 cancer samples, and preprocessing has already been performed on the beta values.
Author: Vasileios Lemonidis [aut, cre, cph]
, Center for Oncological Research, University of Antwerp [cph, fnd], Stichting Tegen Kanker [fnd]
Maintainer: Vasileios Lemonidis <vasileios.lemonidis at uantwerpen.be>
citation("DMRsegaldata")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DMRsegaldata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DMRsegaldata")| Introduction to DMRsegaldata | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, ExperimentHub, Genome, MicroarrayData, SNPData, SequencingData |
| Version | 1.0.0 |
| License | GPL (>= 2) |
| Depends | R (>= 4.5.0), ExperimentHub |
| Imports | |
| System Requirements | |
| URL | https://github.com/CMG-UA/DMRsegal |
| Bug Reports | https://github.com/CMG-UA/DMRsegal/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, ExperimentHubData |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DMRsegaldata_1.0.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/DMRsegaldata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DMRsegaldata |
| Package Short Url | https://bioconductor.org/packages/DMRsegaldata/ |
| Package Downloads Report | Download Stats |