To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DNAcopy")

In most cases, you don't need to download the package archive at all.

DNAcopy

 

DNA copy number data analysis

Bioconductor version: Release (3.1)

Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.

Author: Venkatraman E. Seshan, Adam Olshen

Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>

Citation (from within R, enter citation("DNAcopy")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DNAcopy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNAcopy")

 

PDF R Script DNAcopy
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, Software
Version 1.42.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 10 years)
License GPL (>= 2)
Depends
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me CGHcall, cghMCR, Clonality, CopyNumber450k, CRImage, snapCGH, SomatiCA
Imports Me ADaCGH2, ArrayTV, ChAMP, Clonality, cn.farms, CNAnorm, CNVrd2, conumee, CopywriteR, GWASTools, MEDIPS, MinimumDistance, QDNAseq, Repitools, snapCGH, SomatiCA
Suggests Me beadarraySNP, Clonality, cn.mops, fastseg, genoset
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DNAcopy_1.42.0.tar.gz
Windows Binary DNAcopy_1.42.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DNAcopy_1.42.0.tgz
Mac OS X 10.9 (Mavericks) DNAcopy_1.42.0.tgz
Browse/checkout source (username/password: readonly)
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