CRImage

CRImage a package to classify cells and calculate tumour cellularity

Bioconductor version: Release (2.14)

CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.

Author: Henrik Failmezger <failmezger at mpipz.mpg.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>, Oscar Rueda <oscar.rueda at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>

Maintainer: Henrik Failmezger <failmezger at mpipz.mpg.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CRImage")

To cite this package in a publication, start R and enter:

    citation("CRImage")

Documentation

PDF R Script CRImage Manual
PDF   Reference Manual

Details

biocViews CellBiology, Classification, Software
Version 1.12.0
In Bioconductor since BioC 2.7 (R-2.12)
License Artistic-2.0
Depends EBImage, DNAcopy, aCGH
Imports MASS, e1071, foreach, sgeostat
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source CRImage_1.12.0.tar.gz
Windows Binary CRImage_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CRImage_1.12.0.tgz
Mac OS X 10.9 (Mavericks)
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